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Deep Research Pipeline

Deep research: academic extract to deep research to paper Q&A to data plots.

Skills in this bundle

1/4

Paper Miner

Extract structured tables, figures, and metadata from academic PDFs. Supports batch processing and exports to CSV/JSON for research data preparation and literature review synthesis.

Skill5 Nex
2/4

Deep Research

Systematic multi-angle research for natural-language questions. search -> fetch -> parse -> evidence-extract -> headline synth. Orchestrator only — every primitive delegates to engines/data/*.

Agent35 Nex
3/4

ChatPaper

Deep Q&A over an academic paper: scholarly snapshot, methodology x-ray, critical appraisal, plain-language explainer, grounded question answering. Use when you need deep q&a over an academic paper. (Action Co-pilot: generates next-best-actions (actions.json), follow-up tasks and calendar reminders on top of the analysis — what to act on today.)

Skill5 Nex
4/4

Data Plots

Generate Mermaid-based charts and diagrams from CSV or Excel data for embedding in docs and reports.

Skill5 Nex

See it in action

Deep Research Pipeline demo
Overview
Overview
How it works (V22)
How it works (V22)
Why MCP Nexus
Why MCP Nexus
Get started
Get started
Download demo video (MP4)
Quick answer

Deep research: academic extract to deep research to paper Q&A to data plots. MCP Nexus orchestrates 4 skills (Paper Miner, Deep Research, ChatPaper, Data Plots) into one reproducible workflow that runs on your machine, keeps data in your network, and delivers results in minutes.

  • Paper Miner: Extract structured tables, figures, and metadata from acade…
  • Deep Research: Systematic multi-angle research for any topic OR comprehens…
  • ChatPaper: Deep Q&A over an academic paper: scholarly snapshot, method…
  • Data Plots: Generate Mermaid-based charts and diagrams from CSV or Exce…

What is Deep Research Pipeline with MCP Nexus

Deep Research Pipeline chains 4 skills (Paper Miner, Deep Research, ChatPaper, Data Plots) into one reproducible workflow covering the key steps from input to result, running fully on-premises with data staying in your network, for teams that need Deep research: academic extract to deep research… on demand.

How it works

1Step 1
Paper Miner
Extract structured tables, figures, and metadata from academic PDFs. Supports batch processing and…
2Step 2
Deep Research
Systematic multi-angle research for any topic OR comprehensive GitHub repository analysis. Auto-rou…
3Step 3
ChatPaper
Deep Q&A over an academic paper: scholarly snapshot, methodology x-ray, critical appraisal, plain-l…
4Step 4
Data Plots
Generate Mermaid-based charts and diagrams from CSV or Excel data for embedding in docs and reports.

MCP Nexus vs alternatives

MCP NexusManual / ExcelGeneric AI / Cloud tools
PricingFree tier, metered by callsMany manual hoursPer-seat plus per-volume fees
Local executionYes, data stays on-premisesManual processNo, data leaves your network
Setup timeMinutes to first runDays, experience-dependent~1 week integration and training

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