Deep Research Pipeline
Deep research: academic extract to deep research to paper Q&A to data plots.
Skills in this bundle
Paper Miner
Extract structured tables, figures, and metadata from academic PDFs. Supports batch processing and exports to CSV/JSON for research data preparation and literature review synthesis.
Deep Research
Systematic multi-angle research for natural-language questions. search -> fetch -> parse -> evidence-extract -> headline synth. Orchestrator only — every primitive delegates to engines/data/*.
ChatPaper
Deep Q&A over an academic paper: scholarly snapshot, methodology x-ray, critical appraisal, plain-language explainer, grounded question answering. Use when you need deep q&a over an academic paper. (Action Co-pilot: generates next-best-actions (actions.json), follow-up tasks and calendar reminders on top of the analysis — what to act on today.)
Data Plots
Generate Mermaid-based charts and diagrams from CSV or Excel data for embedding in docs and reports.
See it in action





Deep research: academic extract to deep research to paper Q&A to data plots. MCP Nexus orchestrates 4 skills (Paper Miner, Deep Research, ChatPaper, Data Plots) into one reproducible workflow that runs on your machine, keeps data in your network, and delivers results in minutes.
- Paper Miner: Extract structured tables, figures, and metadata from acade…
- Deep Research: Systematic multi-angle research for any topic OR comprehens…
- ChatPaper: Deep Q&A over an academic paper: scholarly snapshot, method…
- Data Plots: Generate Mermaid-based charts and diagrams from CSV or Exce…
What is Deep Research Pipeline with MCP Nexus
Deep Research Pipeline chains 4 skills (Paper Miner, Deep Research, ChatPaper, Data Plots) into one reproducible workflow covering the key steps from input to result, running fully on-premises with data staying in your network, for teams that need Deep research: academic extract to deep research… on demand.
How it works
MCP Nexus vs alternatives
| MCP Nexus | Manual / Excel | Generic AI / Cloud tools | |
|---|---|---|---|
| Pricing | Free tier, metered by calls | Many manual hours | Per-seat plus per-volume fees |
| Local execution | Yes, data stays on-premises | Manual process | No, data leaves your network |
| Setup time | Minutes to first run | Days, experience-dependent | ~1 week integration and training |